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diff --git a/cv_eliseo_papa.md b/cv_eliseo_papa.md index 8cfcfb1..74335be 100644 --- a/cv_eliseo_papa.md +++ b/cv_eliseo_papa.md @@ -1,45 +1,50 @@ # Eliseo Papa ## Biomedical Engineer, Computational Biologist, Data Scientist ->[Download PDF](resume.pdf) ->[elipapa@alum.mit.edu](elipapa@alum.mit.edu) ->[eliseopapa.org](http://eliseopapa.org) -> +44 7503 858936 -> + 1 347 635 4736 -> skype: eliseo.papa - - ->Born: September 16, 1982 — Belleville, Canada\ +>[Download PDF](resume.pdf) +>[LinkedIn](http://uk.linkedin.com/in/eliseopapa) +>[elipapa@alum.mit.edu](mailto:elipapa@alum.mit.edu) +>[eliseopapa.org](http://eliseopapa.org) +> +44 7503 858936 +> + 1 347 635 4736 +> skype: eliseo.papa +> +>Born: September 16, 1982 — Belleville, Canada >Nationality: Italian & Canadian citizen + ### Current position -: *MBBS Candidate* - Graduate Entry Medicine, Imperial College London -: Researcher - Alm lab @ MIT +- MBBS Candidate, Graduate Entry Medicine, Imperial College London +- Researcher, Alm lab, MIT #### Areas of specialization + Medical Engineering, Analysis of large data sets, Microbiome, Machine learning, Immunology, Optics, Nano/microfabrication, Phylogenetics. #### Research interests + Host-pathogen interactions at the level of microbiome and single cells. Human Microbiome Project. Electronic health records. Emerging properties of networks in a biological and social context. Self-organized systems. ### Languages + - Italian: Mother tongue - English: Perfect oral written fluency; Canadian inflection - French: Working knowledge ### Education + Imperial College London : MBBS Graduate Entry Medicine Programme __2009-present__ Harvard Medical School & Massachusets Institute of Technology : PhD, [Harvard/MIT Health Science & Technology institute](hst.mit.edu) - __2006 - 2012__ - Biomedical Engineering + __2006 - 2012__ + Biomedical Engineering Thesis: [High-throughput experimental and computational tools for exploring immunity and the microbiome](https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1) + + Courses: * Harvard Medical School: pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology * MIT: biomechanics,statistical learning, systems microbiology forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling. @@ -54,125 +59,128 @@ University of Toronto ### Fellowships -- NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada -__2010-2011__ -- Poitras Pre-doctoral Fellowship -__2008-2009__ - -: Martino Scholar - Harvard/MIT Health Science Tech. Inst. - __2007__ + +__2010-2011__ NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada + +__2008-2009__ Poitras pre-doctoral fellowship -: NSERC Postgraduate M Scholarship - National Science Engineering Research Council, Canada - __2005-2008__ +__2007__ Martino Scholar, Harvard/MIT Health Science Tech. Inst. + +__2005-2008__ NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada -: OGS Postgraduate Scholarship - (declined), Ontario Government, Canada2005 +__2005__ OGS Postgraduate Scholarship (declined), Ontario Government, Canada2005 -- __2004__ NSERC Summer Research Award, National Science Engineering Research Council, Canada -- __2003__ #2 Canadian Army University Course Undergrad Scholarship,University of -Toronto +__2004__ NSERC Summer Research Award, National Science Engineering Research Council, Canada + +__2003__ #2 Canadian Army University Course Undergrad Scholarship,University of Toronto + +### Honors & awards -###Honors awards __2012__ Bursary recipient, *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences + __2008__ Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst. -Competition Semifinalist, MIT 100k Business Plan2008\ -University of Toronto Life Sciences Award, University of Toronto2004\ -Silver T – academic athletic excellence, University of Toronto2002-2004\ -OUA Academic Achievement Award 2003, Ontario, Canada\ -Ontario Scholar, 2001Government of Ontario, Canada\ +__2008__ Competition Semifinalist, MIT 100k Business Plan + +__2004__ University of Toronto Life Sciences Award, University of Toronto + +__2002-2004__ Silver T – academic athletic excellence, University of Toronto + +__2003__ OUA Academic Achievement Award, Ontario, Canada + +__2001__ Ontario Scholar, Government of Ontario, Canada ### Publications -[A list is also available online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ) +>A list is also available [online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ) #### Journal articles -**Eliseo Papa**, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B -Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm. -Non-invasive mapping of the gastrointestinal microbiota -identifies children with inflammatory bowel disease. *PLoS One*. 2012;7(6):e39242. - -2011Rhiannon White, Sachiko Miyata, **Eliseo Papa**, Eric Spooner, -Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas. -Characterisation of the Trichinella spiralis deubiquitinating enzyme, -TsUCH37, an evolutionarily conserved proteasome interaction partner. *PLoS Negl Trop Dis.* 2011 Oct;5(10):e1340. - -2011Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, **Eliseo Papa**, -Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L -Ploegh and Jatin M Vyas. The Tetraspanin CD82 is Specifically Recruited -to Fungal and Bacterial Phagosomes Prior to Acidification. *Infection -and Immunity*,79(3):1098-106\ -\ -2009Adebola Ogunniyi, Craig Story, **Eliseo Papa**, Eduardo Guillen, J. -Christopher Love. Screening Individual Hybridomas by Microengraving to -Discover Monoclonal Antibodies. *Nature Protocols [Impact Factor: -4.170]*,4(5):767-82\ -\ -2009Jehnna L. Ronan, Craig Story, **Eliseo Papa**, J. Christopher Love. -Optimization of the surfaces used to capture antibodies from single -hybridomas reduces the time required for microengraving.*Journal of -Immunological Methods [Impact Factor: 2.120]*, 340(2):164-9\ -\ -2008Craig Story\*, **Eliseo Papa\* (co-author)**, Chih-Chi Andrew Hu, -Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love. Profiling Antibody -Responses by Multiparametric Analysis of Single B Cells. *PNAS [Impact -Factor: 9.380]*, 105(46):17902-7\ -\ -2005Hans Fischer, **Eli Papa**, Lichuan Liu, K. Sandy Pang, Warren C. W. -Chan. Preliminary Results: Exploring the Interactions of Quantum Dots -with Whole Blood Components. *SPIE Proceedings*, 5969,54\ -\ -2004Wen Jiang, **Eli Papa**, Hans Fischer, Sawitri Mardyani, Warren C.W. -Chan. Semiconductor quantum dots as contrast agents for whole animal -imaging. *Trends in Biotechnology [Impact Factor: 6.624]*, 22:12\ +*Eliseo Papa*, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm. +Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. +**PLoS One**. 2012;7(6):e39242. + +Rhiannon White, Sachiko Miyata, *Eliseo Papa*, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas. +Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner. +**PLoS Negl Trop Dis.** 2011 Oct;5(10):e1340. + +Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, *Eliseo Papa*, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas. +The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification. +**Infection and Immunity** 2011 79(3):1098-106\ + +Adebola Ogunniyi, Craig Story, *Eliseo Papa*, Eduardo Guillen, J. +Christopher Love. Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies. +**Nature Protocols** 2009 4(5):767-82 + +Jehnna L. Ronan, Craig Story, *Eliseo Papa*, J. Christopher Love. +Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving. +**Journal of Immunological Methods** 2009, 340(2):164-9\ + +Craig Story\*, *Eliseo Papa\* (co-author)*, Chih-Chi Andrew Hu, +Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love. +Profiling Antibody Responses by Multiparametric Analysis of Single B Cells. +**PNAS** 2008 105(46):17902-7 + +Hans Fischer, *Eli Papa*, Lichuan Liu, K. Sandy Pang, Warren C. W. +Chan. +Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components. +**SPIE Proceedings** 2005 5969,54 + +Wen Jiang, *Eli Papa*, Hans Fischer, Sawitri Mardyani, Warren C.W. +Chan. +Semiconductor quantum dots as contrast agents for whole animal imaging. +**Trends in Biotechnology** 2004 22:12 + #### Posters -White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K -Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37 -__2012__ Hydra 2012, Molecular and Cellular Biology of Helminth Parasites VII - -Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm. -Diagnosing IBD from the fecal microbiome.(http://eliseopapa.org/downloads/documents/ibdML-poster.pdf) -__2012__ *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences - -2008AIChE annual meeting, Nanoscale Science Engineering Forum, -*High-Throughput and High-Content Screening of Antibody Responses from -Single Cells*\ -2008AIChE annual meeting, Engineering Fundamentals in Life Sciences, -*Applying Ligands to B Cell Receptors by Microfluidics*\ -2008Harvard/MIT HST Forum, *Microengraving for high-throughput affinity -mapping of humoral responses*\ -2008Novartis Vaccine Symposium, *Multi-variate profiling of B cell -immune responses*\ -#### Patent applications -2009Composition of an Array of Microwells with an Integrated -Microfluidic System, USA Serial No. 12/390279\ +White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K +Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37 +: Molecular and Cellular Biology of Helminth Parasites VII __2012__ -### Research experience +Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm. +[Diagnosing IBD from the fecal microbiome](http://eliseopapa.org/downloads/documents/ibdML-poster.pdf) +: *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences __2012__ -Researcher, Alm Laboratory for Microbiology, Prof. Eric J. -Alm, MIT -__2009 - present__ -Human Microbiome Project +High-Throughput and High-Content Screening of Antibody Responses from Single Cells +: AIChE annual meeting, Nanoscale Science Engineering Forum __2008__ -Bioinformatics, microbial evolution, phylogenetics\ +Applying Ligands to B Cell Receptors by Microfluidics +: AIChE annual meeting, Engineering Fundamentals in Life Sciences __2008__ -2006-2009Research Assistant, Laboratory of Hidde L. Ploegh, Whitehead -Institute, MIT +Microengraving for high-throughput affinity mapping of humoral responses +: Harvard/MIT HST Forum __2008__ -Affinity and isotype mapping of antibody secretion in individual primary -B cells. +Multi-variate profiling of B cell immune responses +: Novartis Vaccine Symposium __2008__ -Development of computational and statistical tools to monitor and -predict evolution of immune responses +#### Patent applications -Murine antibody cloning and expression; fluorescence tagging +Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279 __2009__ -Real time fluorescence microcopy; advanced image analysis\ + +### Research experience {#experience} + +Researcher +: Alm Laboratory for Microbiology + Prof. Eric J. Alm + MIT + __2009 - present__ + - Human Microbiome Project + - Bioinformatic analysis of large datasets + - Microbial evolution, phylogenetics + +Researcher +: Laboratory of Hidde L. Ploegh + Whitehead Institute + MIT + __2006-2009__ + - Affinity and isotype mapping of antibody secretion in individual primary +B cells. + - Development of computational and statistical tools to monitor and +predict evolution of immune responses + - Murine antibody cloning and expression; fluorescence tagging + - Real time fluorescence microcopy; advanced image analysis Researcher, Biomedical Nanotechnology Group, Prof. W C. Chan, University of Toronto2004-2005 @@ -193,82 +201,92 @@ applications. Morphological, mechanical and functional characterization of polyurethane scaffolds.\ + ### Other employment experience -2006 ESL Teacher, Inlingua Language School, Brescia, Italy +ESL Teacher, Inlingua Language School, Brescia, Italy +__2006__ -Teaching approx. 12hrs/week on individual basis and to large groups +- Teaching approx. 12hrs/week on individual basis and to large groups +- Provided on site focussed training for companies\ -Provided on site focussed training for companies\ Residence Don, St.Michael’s College Residence, University of -Toronto2004-2005 - -Mediate conflicts and provide academic or personal consulting. +Toronto +__2004-2005__ -Trained in cultural competence and conflict resolution +- Mediate conflicts and provide academic or personal consulting. +- Trained in cultural competence and conflict resolution +- Responsible to enforce rules and to foster an accepting community -Responsible to enforce rules and to foster an accepting community\ IT Consultant System Admin, Ital Engineering s.a.s., Brescia, -Italy2000-2002 +Italy +__2000-2002__ -Interviewed the customer and performed an organizational analysis +- Interviewed the customer and performed an organizational analysis +- Regularly performed formal presentations to the management -Regularly performed formal presentations to the management\ -Graphic Designer, Photo Image Studio, Brescia, Italy 2000 +Graphic Designer, Photo Image Studio, Brescia, Italy +__2000__ -Assisted artists in the preparation and coordination of gallery -expositions\ +- Assisted photographers in the preparation of gallery +exhibitions and openings -### Extracurricular activities +### Extracurricular activities -Competitive Cycling. MIT Cycling Team +Collegiate Cycling. MIT Cycling Team -National Collegiate Road Champions2008 +- National Collegiate Road Champions __2008__ +- Eastern Collegiate Cycling Conference Road Champions __2008__ +- *Captain*, Cyclocross, $2^{nd}$ US National Championship __2007__ +- Eastern Collegiate Cycling Conference Road Champions __2007__ +- Cyclocross, US National Champions __2006__ -Eastern Collegiate Cycling Conference Road Champions2008 -**Captain**, Cyclocross, $2^{nd}$ US National Championship2007 +Competitive Triathlon. Atletica Desenzano -Eastern Collegiate Cycling Conference Road Champions2007 +- 9th cat. at ITU Bardolino’s International Triathlon __2006__ -Cyclocross, US National Champions2006\ -Competitive Triathlon. Atletica Desenzano +Competitive Sailing. Italian sailing federation (FIV). -9th cat. at ITU Bardolino’s International Triathlon2006\ +- 12th at European IMS Sailing Championship __2003__ +- 6th at Canadian J105 Championship __2004__ -Competitive Sailing. Italian sailing federation (FIV). -12th at European IMS Sailing Championship2003 +Engineers Without Borders. -6th at Canadian J105 Championship2004\ +- University of Toronto Conference delegate __2004__ -Engineers Without Borders. University of Toronto Conference -delegate2004\ University of Toronto Varsity Waterpolo. -OUA Conference Champions2002\ +- OUA Conference Champions __2002__ + -Competitive Swimming. Nuoto Club Brescia Swimming Club1998-2001\ +Competitive Swimming. Nuoto Club Brescia Swimming Club +__1998-2001__ -### Volunteering Experiences -2005Field Operative, AISPO, San Raffaele del Monte Tabor Foundation, +### Volunteering Experiences {#volunteering} + +Field Operative, AISPO, San Raffaele del Monte Tabor Foundation, Milan, Italy +__2005__ + +- ID Laboratory Operative, Kampala’s Hospital Gulu’s outpost, Uganda +- Assessed the infrastructure and human resources of Kampala’s hospital -ID Laboratory Operative, Kampala’s Hospital Gulu’s outpost, Uganda -Assessed the infrastructure and human resources of Kampala’s hospital\ +### Interests {#interests} -### Interests Listening avidly to Jazz music. International relations. Semiotics and its implications on mass psychology. Buddhism, Zen and oriental philosophies. Reading classics of Italian and English literature. Travelled by kayak along the major European rivers. Rock Climbing. -### Footer +### Footer {#footer} + Last updated: |