From a9b59148c52025f883163aac4e1d081638a2f655 Mon Sep 17 00:00:00 2001 From: eliseo papa Date: Sun, 21 Oct 2012 20:09:18 +0100 Subject: markdown-cv 1.0 --- cv_eliseo_papa.html | 285 ++++++++++++++++++++++++++++++---------------------- 1 file changed, 166 insertions(+), 119 deletions(-) (limited to 'cv_eliseo_papa.html') diff --git a/cv_eliseo_papa.html b/cv_eliseo_papa.html index 6c77d14..7e86a1a 100644 --- a/cv_eliseo_papa.html +++ b/cv_eliseo_papa.html @@ -4,57 +4,66 @@

Eliseo Papa

-

Biomedical Engineer, Computational Biologist, Data Scientist

-

-
-

elipapa@alum.mit.edu | +

Biomedical Engineer, Computational Biologist, Data Scientist

+

+elipapa@alum.mit.edu | eliseopapa.org | -LinkedIn | +LinkedIn -+44 7503 858936 +

-
-

Current position

-

MBBS Candidate, Graduate Entry Medicine, Imperial College London

-

Researcher, Alm lab, MIT

-

Areas of specialization

+

Current position

+

MBBS Candidate, Graduate Entry Medicine, Imperial College London
+Researcher, Alm lab, MIT

+

Specialized in

Medical Engineering, Analysis of large data sets, Microbiome, Machine learning, Immunology, Optics, Nano/microfabrication, Phylogenetics.

-

Research interests

+

Research interests

Host-pathogen interactions at the level of microbiome and single cells. Human Microbiome Project. High-throughput diagnostics. Electronic health records. Emerging properties of networks in a biological and social context. Self-organized systems.

-

Languages

+

Languages

+

Italian: Mother tongue
+English: Perfect oral & written fluency
+French: Working knowledge
+

+

Education

+

2009-now +Imperial College London

+

2006-2012 +Harvard Medical School & Massachusets Institute of Technology

+ -

Education

-

Imperial College London -2009-now -: MBBS Graduate Entry Medicine Programme

-

Harvard Medical School & Massachusets Institute of Technology -2006-2012 -: PhD, Biomedical Engineering,
-Harvard/MIT Health Science & Technology Institute
- Thesis: High-throughput experimental and computational tools for exploring immunity and the microbiome
- Representative courses:
-Harvard Medical School - pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology.
-MIT - biomechanics, statistical learning, systems microbiology, forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling.

-

Massachusets Institute of Technology -2006-2008 -: SM in Mechanical Engineering

-

University of Toronto -2001-2005 -: BASc (Honors) - Engineering Science (Biomedical Option)

-

Fellowships

+

2006-2008 +Massachusets Institute of Technology

+ +

2001-2005 +University of Toronto

+ +

Fellowships

2010-2011 NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada

2008-2009 @@ -69,7 +78,7 @@ OGS Postgraduate Scholarship (declined), Ontario Government, Canada

NSERC Summer Research Award, National Science Engineering Research Council, Canada

2003 #2 Canadian Army University Course Undergrad Scholarship,University of Toronto

-

Honors & awards

+

Awards

2012 Bursary recipient, Exploring Human Host-Microbiome Interactions in Health and Disease, Wellcome Trust Scientific Conferences

2008 @@ -84,35 +93,43 @@ Silver T – academic athletic excellence, University of Toronto

OUA Academic Achievement Award, Ontario, Canada

2001 Ontario Scholar, Government of Ontario, Canada

-

Publications

+

Publications

-

Journal articles

-

Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.
+

Journals

+

2012 +Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. -PLoS One. 2012;7(6):e39242.

-

Rhiannon White, Sachiko Miyata, Eliseo Papa, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.
+PLoS ONE 2012;7(6):e39242.

+

2011 +Rhiannon White, Sachiko Miyata, Eliseo Papa, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.
Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner. PLoS Negl Trop Dis. 2011 Oct;5(10):e1340.

-

Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, Eliseo Papa, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.
+

2011 +Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, Eliseo Papa, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.
The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification. Infection and Immunity 2011 79(3):1098-106\

-

Adebola Ogunniyi, Craig Story, Eliseo Papa, Eduardo Guillen, J. Christopher Love.
+

2009 +Adebola Ogunniyi, Craig Story, Eliseo Papa, Eduardo Guillen, J. Christopher Love.
Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies. Nature Protocols 2009 4(5):767-82

-

Jehnna L. Ronan, Craig Story, Eliseo Papa, J. Christopher Love. +

2009 +Jehnna L. Ronan, Craig Story, Eliseo Papa, J. Christopher Love. Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving. Journal of Immunological Methods 2009, 340(2):164-9\

-

Craig Story*, Eliseo Papa* (co-author), Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.
+

2008 +Craig Story*, Eliseo Papa* (co-author), Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.
Profiling Antibody Responses by Multiparametric Analysis of Single B Cells. PNAS 2008 105(46):17902-7

-

Hans Fischer, Eli Papa, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan.
+

2005 +Hans Fischer, Eli Papa, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan.
Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components. SPIE Proceedings 2005 5969,54

-

Wen Jiang, Eli Papa, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan. +

2004 +Wen Jiang, Eli Papa, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan. Semiconductor quantum dots as contrast agents for whole animal imaging. Trends in Biotechnology 2004 22:12

-

Posters

+

Posters

2012 White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K
Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37
@@ -133,78 +150,108 @@ Microengraving for high-throughput affinity mapping of humoral responses

2008 Multi-variate profiling of B cell immune responses
Novartis Vaccine Symposium

-

Patents

+

Patents

2009 Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279

-

Research experience

-

Alm Laboratory for Microbiology, Prof. Eric J. Alm, MIT -2009-present -: - Human Microbiome Project - - Bioinformatic analysis of large datasets - - Microbial evolution, phylogenetics

-

Laboratory of Hidde L. Ploegh, Whitehead Institute, MIT -2006-2009 -: - Affinity and isotype mapping of antibody secretion in individual primary B cells. - - Development of computational and statistical tools to monitor and predict evolution of immune responses - - Murine antibody cloning and expression; fluorescence tagging - - Real time fluorescence microcopy; advanced image analysis

-

Biomedical Nanotechnology Group, Prof. W C. Chan, University of Toronto -2004-2005 -: - Nanoparticles cytotoxicity - - Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD) - - Real time fluorescence microscopy, single molecule spectroscopy and biophysics.

-

Biomaterials Group, Prof. M.C.Tanzi, Politecnico di Milano, Italy -2003 -: - Synthesis of biocompatible polymeric scaffolds for tissue engineering applications. - - Morphological, mechanical and functional characterization of polyurethane scaffolds.

-

Other employment

-

ESL Teacher, Inlingua Language School, Brescia, Italy -2006 -: - Teaching approx. 12hrs/week on individual basis and to large groups - - Provided on site focussed training for companies

-

Residence Don, St.Michael’s College Residence, University of Toronto -2004-2005 -: - Mediate conflicts and provide academic or personal consulting. - - Trained in cultural competence and conflict resolution - - Responsible to enforce rules and to foster an accepting community

-

IT Consultant System Admin, Ital Engineering s.a.s., Brescia, Italy -2000-2002 -: - Interviewed the customer and performed an organizational analysis - - Regularly performed formal presentations to the management

-

Graphic Designer, Photo Image Studio, Brescia, Italy -2000 -: - Assisted photographers in the preparation of gallery exhibitions and openings

-

Extracurricular

-

Collegiate Cycling. MIT Cycling Team -2006-2008 -: - National Collegiate Road Champions - - Eastern Collegiate Cycling Conference Road Champions - - Captain, Cyclocross, $2^{nd}$ US National Championship - - Eastern Collegiate Cycling Conference Road Champions - - Cyclocross, US National Champions

-

Competitive Triathlon. Team Atletica Desenzano -2006 -: - 9th cat. at ITU Bardolino’s International Triathlon

-

Competitive Sailing. Italian sailing federation (FIV). -2003-2004 -: - 12th at European IMS Sailing Championship - - 6th at Canadian J105 Championship

-

Engineers Without Borders. -2004 -: - University of Toronto Conference delegate

-

University of Toronto Varsity Waterpolo. -2002 -: - OUA Conference Champions

-

Nuoto Club Brescia Swimming Club -1998-2001 -: - Regional level competitions

-

Volunteering

-

Field Operative, AISPO, San Raffaele del Monte Tabor Foundation, Milan, Italy -2005 -: - Streamlined diagnostic routines, Kampala’s Hospital & Gulu’s outpost, Uganda - - Consulted regarding the infrastructure, human resources and logistics of the Kampala’s hospital

-

Interests

-

Listening avidly to Jazz music. International relations. Semiotics and +

Research

+

2009-now +Alm Laboratory for Microbiology, Prof. Eric J. Alm, MIT

+ +

2006-2009 +Laboratory of Hidde L. Ploegh, Whitehead Institute, MIT

+ +

2004-2005 +Biomedical Nanotechnology Group, Prof. W C. Chan, University of Toronto

+ +

2003 +Biomaterials Group, Prof. M.C.Tanzi, Politecnico di Milano, Italy

+ +

Other employment

+

2006 +ESL Teacher, Inlingua Language School, Brescia, Italy

+ +

2004-2005 +Residence Don, St.Michael’s College Residence, University of Toronto, Canada

+ +

2000-2002 +IT Consultant System Admin, Ital Engineering s.a.s., Brescia, Italy

+ +

2000 +Graphic Designer, Photo Image Studio, Brescia, Italy

+ +

Extracurricular

+

2006-2008 +Collegiate Cycling. MIT Cycling Team

+ +

2006 +Competitive Triathlon. Team Atletica Desenzano

+ +

2003-2004 +Competitive Sailing. Italian sailing federation (FIV).

+ +

2004 +Engineers Without Borders.

+ +

2002 +University of Toronto Varsity Waterpolo.

+ +

1998-2001 +Nuoto Club Brescia Swimming Club

+ +

Volunteering

+

2005 +Field Operative, AISPO, San Raffaele del Monte Tabor Foundation. Milan, Italy

+ +

Interests

+

Jazz music. International relations. Semiotics and its implications on mass psychology. Buddhism, Zen and oriental philosophies. Reading classics of Italian and English literature. Travelled by kayak along the major European rivers. Rock Climbing.

-- cgit v1.2.3