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diff --git a/cv_eliseo_papa.html b/cv_eliseo_papa.html new file mode 100644 index 0000000..e2e6e77 --- /dev/null +++ b/cv_eliseo_papa.html @@ -0,0 +1,213 @@ +<!doctype html> +<head> + <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> + <link href="epcv.css" type="text/css" rel="stylesheet"> +</head> +<h1>Eliseo Papa</h1> +<p><em>Biomedical Engineer, Computational Biologist, Data Scientist</em></p> +<p><address markdown=1></p> +<blockquote> +<p><a href="mailto:elipapa@alum.mit.edu">elipapa@alum.mit.edu</a> | +<a href="http://eliseopapa.org">eliseopapa.org</a> | +<a href="http://uk.linkedin.com/in/eliseopapa">LinkedIn</a> | +<!-- > skype: eliseo.papa --> ++44 7503 858936 +<!-- > +1 347 635 4736 --> +</address></p> +</blockquote> +<!-- +>Born: September 16, 1982 — Belleville, Canada +>Nationality: Italian & Canadian citizen +--> + +<h3>Current position</h3> +<p>MBBS Candidate, Graduate Entry Medicine, Imperial College London</p> +<p>Researcher, <a href="http://almlab.mit.edu">Alm lab</a>, MIT</p> +<h4>Areas of specialization</h4> +<p>Medical Engineering, Analysis of large data sets, Microbiome, Machine learning, Immunology, Optics, Nano/microfabrication, Phylogenetics.</p> +<h4>Research interests</h4> +<p>Host-pathogen interactions at the level of microbiome and single cells. Human Microbiome Project. High-throughput diagnostics. Electronic health records. Emerging properties of networks in a biological and social context. Self-organized systems.</p> +<h3>Languages</h3> +<ul> +<li>Italian: Mother tongue</li> +<li>English: Perfect oral & written fluency<br /> +</li> +<li>French: Working knowledge<br /> +</li> +</ul> +<h3>Education</h3> +<p>Imperial College London +<code>2009-now</code> +: MBBS Graduate Entry Medicine Programme</p> +<p>Harvard Medical School & Massachusets Institute of Technology +<code>2006-2012</code> +: PhD, Biomedical Engineering,<br /> +<a href="http://hst.mit.edu">Harvard/MIT Health Science & Technology Institute</a><br /> + Thesis: <a href="https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1">High-throughput experimental and computational tools for exploring immunity and the microbiome</a><br /> + Representative courses:<br /> +<em>Harvard Medical School</em> - pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology.<br /> +<em>MIT</em> - biomechanics, statistical learning, systems microbiology, forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling.</p> +<p>Massachusets Institute of Technology +<code>2006-2008</code> +: SM in Mechanical Engineering</p> +<p>University of Toronto +<code>2001-2005</code> +: BASc (Honors) + Engineering Science (Biomedical Option)</p> +<h3>Fellowships</h3> +<p><code>2010-2011</code> +NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada</p> +<p><code>2008-2009</code> +Poitras pre-doctoral fellowship </p> +<p><code>2007</code> +Martino Scholar, Harvard/MIT Health Science Tech. Inst.</p> +<p><code>2005-2008</code> +NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada</p> +<p><code>2005</code> +OGS Postgraduate Scholarship (declined), Ontario Government, Canada</p> +<p><code>2004</code> +NSERC Summer Research Award, National Science Engineering Research Council, Canada</p> +<p><code>2003</code> +#2 Canadian Army University Course Undergrad Scholarship,University of Toronto</p> +<h3>Honors & awards</h3> +<p><code>2012</code> +Bursary recipient, <em>Exploring Human Host-Microbiome Interactions in Health and Disease</em>, Wellcome Trust Scientific Conferences</p> +<p><code>2008</code> +Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst.</p> +<p><code>2008</code> +Competition Semifinalist, MIT 100k Business Plan</p> +<p><code>2004</code> +University of Toronto Life Sciences Award, University of Toronto</p> +<p><code>2002-04</code> +Silver T – academic athletic excellence, University of Toronto</p> +<p><code>2003</code> +OUA Academic Achievement Award, Ontario, Canada</p> +<p><code>2001</code> +Ontario Scholar, Government of Ontario, Canada</p> +<h3>Publications</h3> +<!-- A list is also available [online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ) --> + +<h4>Journal articles</h4> +<p><em>Eliseo Papa</em>, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.<br /> +<a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039242">Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.</a> +<strong>PLoS One</strong>. 2012;7(6):e39242.</p> +<p>Rhiannon White, Sachiko Miyata, <em>Eliseo Papa</em>, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.<br /> +Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner. +<strong>PLoS Negl Trop Dis.</strong> 2011 Oct;5(10):e1340.</p> +<p>Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, <em>Eliseo Papa</em>, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.<br /> +The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification. +<strong>Infection and Immunity</strong> 2011 79(3):1098-106\</p> +<p>Adebola Ogunniyi, Craig Story, <em>Eliseo Papa</em>, Eduardo Guillen, J. Christopher Love.<br /> +Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies. +<strong>Nature Protocols</strong> 2009 4(5):767-82</p> +<p>Jehnna L. Ronan, Craig Story, <em>Eliseo Papa</em>, J. Christopher Love. +Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving. +<strong>Journal of Immunological Methods</strong> 2009, 340(2):164-9\</p> +<p>Craig Story*, <em>Eliseo Papa* (co-author)</em>, Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.<br /> +Profiling Antibody Responses by Multiparametric Analysis of Single B Cells. +<strong>PNAS</strong> 2008 105(46):17902-7</p> +<p>Hans Fischer, <em>Eli Papa</em>, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan.<br /> +Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components. +<strong>SPIE Proceedings</strong> 2005 5969,54</p> +<p>Wen Jiang, <em>Eli Papa</em>, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan. +Semiconductor quantum dots as contrast agents for whole animal imaging. +<strong>Trends in Biotechnology</strong> 2004 22:12</p> +<h4>Posters</h4> +<p><code>2012</code> +White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K<br /> +Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37<br /> +<em>Molecular and Cellular Biology of Helminth Parasites VII</em></p> +<p><code>2012</code> +Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.<br /> +<a href="http://eliseopapa.org/downloads/documents/ibdML-poster.pdf">Diagnosing IBD from the fecal microbiome</a><br /> +<em>Exploring Human Host-Microbiome Interactions in Health and Disease, Wellcome Trust Scientific Conferences</em></p> +<p><code>2008</code> +High-Throughput and High-Content Screening of Antibody Responses from Single Cells<br /> +<em>AIChE annual meeting, Nanoscale Science Engineering Forum</em></p> +<p><code>2008</code> +Applying Ligands to B Cell Receptors by Microfluidics<br /> +<em>AIChE annual meeting, Engineering Fundamentals in Life Sciences</em></p> +<p><code>2008</code> +Microengraving for high-throughput affinity mapping of humoral responses<br /> +<em>Harvard/MIT HST Forum</em></p> +<p><code>2008</code> +Multi-variate profiling of B cell immune responses<br /> +<em>Novartis Vaccine Symposium</em></p> +<h4>Patents</h4> +<p><code>2009</code> +Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279 </p> +<h3>Research experience</h3> +<p>Researcher, Alm Laboratory for Microbiology, Prof. Eric J. Alm, MIT +<code>2009-present</code> +: - Human Microbiome Project + - Bioinformatic analysis of large datasets + - Microbial evolution, phylogenetics</p> +<p>Researcher, Laboratory of Hidde L. Ploegh, Whitehead Institute, MIT +<code>2006-2009</code> +: - Affinity and isotype mapping of antibody secretion in individual primary B cells. + - Development of computational and statistical tools to monitor and predict evolution of immune responses + - Murine antibody cloning and expression; fluorescence tagging + - Real time fluorescence microcopy; advanced image analysis</p> +<p>Researcher, Biomedical Nanotechnology Group, Prof. W C. Chan, University of Toronto +<code>2004-2005</code> +: - Nanoparticles cytotoxicity + - Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD) + - Real time fluorescence microscopy, single molecule spectroscopy and biophysics.</p> +<p>Researcher, Biomaterials Group, Prof. M.C.Tanzi, Politecnico di Milano, Italy +<code>2003</code> +: - Synthesis of biocompatible polymeric scaffolds for tissue engineering applications. + - Morphological, mechanical and functional characterization of polyurethane scaffolds.</p> +<h3>Other employment</h3> +<p>ESL Teacher, Inlingua Language School, Brescia, Italy +<code>2006</code> +: - Teaching approx. 12hrs/week on individual basis and to large groups + - Provided on site focussed training for companies</p> +<p>Residence Don, St.Michael’s College Residence, University of Toronto +<code>2004-2005</code> +: - Mediate conflicts and provide academic or personal consulting. + - Trained in cultural competence and conflict resolution + - Responsible to enforce rules and to foster an accepting community</p> +<p>IT Consultant System Admin, Ital Engineering s.a.s., Brescia, Italy +<code>2000-2002</code> +: - Interviewed the customer and performed an organizational analysis + - Regularly performed formal presentations to the management</p> +<p>Graphic Designer, Photo Image Studio, Brescia, Italy +<code>2000</code> +: - Assisted photographers in the preparation of gallery exhibitions and openings</p> +<h3>Extracurricular</h3> +<p>Collegiate Cycling. <a href="http://cycling.mit.edu/www/home">MIT Cycling Team</a> +<code>2006-2008</code> +: - National Collegiate Road Champions + - Eastern Collegiate Cycling Conference Road Champions + - <em>Captain</em>, Cyclocross, $2^{nd}$ US National Championship + - Eastern Collegiate Cycling Conference Road Champions + - Cyclocross, US National Champions</p> +<p>Competitive Triathlon. Team Atletica Desenzano +<code>2006</code> +: - 9th cat. at ITU Bardolino’s International Triathlon</p> +<p>Competitive Sailing. Italian sailing federation (FIV). +<code>2003-2004</code> +: - 12th at European IMS Sailing Championship + - 6th at Canadian J105 Championship</p> +<p>Engineers Without Borders. +<code>2004</code> +: - University of Toronto Conference delegate</p> +<p>University of Toronto Varsity Waterpolo. +<code>2002</code> +: - OUA Conference Champions</p> +<p>Nuoto Club Brescia Swimming Club +<code>1998-2001</code> +: - Regional level competitions</p> +<h3>Volunteering</h3> +<p>Field Operative, AISPO, San Raffaele del Monte Tabor Foundation, Milan, Italy +<code>2005</code> +: - Streamlined diagnostic routines, Kampala’s Hospital & Gulu’s outpost, Uganda + - Consulted regarding the infrastructure, human resources and logistics of the Kampala’s hospital</p> +<h3>Interests</h3> +<p>Listening avidly to Jazz music. International relations. Semiotics and +its implications on mass psychology. Buddhism, Zen and oriental +philosophies. Reading classics of Italian and English literature. +Travelled by kayak along the major European rivers. Rock Climbing.</p> +<!-- ### Footer + +Last updated: October 2012 -->
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