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authoreliseo papa <elipapa@alum.mit.edu> 2012-10-25 14:42:41 +0100
committereliseo papa <elipapa@alum.mit.edu> 2012-10-25 14:42:41 +0100
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-<!doctype html>
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
- <link href="epcv.css" type="text/css" rel="stylesheet">
-</head>
-<h1>Eliseo Papa</h1>
-<p>Biomedical Engineer, Computational Biologist, Data Scientist</p>
-<p><address markdown=1>
-<a href="mailto:elipapa@alum.mit.edu">elipapa@alum.mit.edu</a> |
-<a href="http://eliseopapa.org">eliseopapa.org</a> |
-<a href="http://uk.linkedin.com/in/eliseopapa">LinkedIn</a>
-<!-- > skype: eliseo.papa -->
-<!-- +44 7503 858936 -->
-<!-- > +1 347 635 4736 -->
-</address></p>
-<!--
->Born: September 16, 1982 — Belleville, Canada
->Nationality: Italian & Canadian citizen
--->
-
-<h2>Current position</h2>
-<p>MBBS Candidate, Graduate Entry Medicine, Imperial College London<br />
-Researcher, <a href="http://almlab.mit.edu">Alm lab</a>, MIT</p>
-<h3>Specialized in</h3>
-<p>Medical Engineering, Analysis of large data sets, Microbiome, Machine learning, Immunology, Optics, Nano/microfabrication, Phylogenetics.</p>
-<h3>Research interests</h3>
-<p>Host-pathogen interactions at the level of microbiome and single cells. Human Microbiome Project. High-throughput diagnostics. Electronic health records. Emerging properties of networks in a biological and social context. Self-organized systems.</p>
-<h2>Languages</h2>
-<p>Italian: Mother tongue<br />
-English: Perfect oral &amp; written fluency<br />
-French: Working knowledge<br />
-</p>
-<h2>Education</h2>
-<p><code>2009-now</code>
-<strong>Imperial College London</strong></p>
-<ul>
-<li>MBBS Graduate Entry Medicine Programme</li>
-</ul>
-<p><code>2006-2012</code>
-<strong>Harvard Medical School &amp; Massachusets Institute of Technology</strong></p>
-<ul>
-<li>PhD, Biomedical Engineering,
- <a href="http://hst.mit.edu">Harvard/MIT Health Science &amp; Technology Institute</a><br />
-</li>
-<li>Thesis: <a href="https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1">High-throughput experimental and computational tools for exploring immunity and the microbiome</a><br />
-</li>
-<li>Representative courses:<br />
-<ul>
-<li><em>Harvard Medical School</em> - pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology.<br />
-</li>
-<li><em>MIT</em> - biomechanics, statistical learning, systems microbiology, forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling.</li>
-</ul>
-</li>
-</ul>
-<p><code>2006-2008</code>
-<strong>Massachusets Institute of Technology</strong></p>
-<ul>
-<li>SM in Mechanical Engineering</li>
-</ul>
-<p><code>2001-2005</code>
-<strong>University of Toronto</strong></p>
-<ul>
-<li>BASc (Honors)</li>
-<li>Engineering Science, Biomedical Option</li>
-</ul>
-<h2>Fellowships</h2>
-<p><code>2010-2011</code>
-NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada</p>
-<p><code>2008-2009</code>
-Poitras pre-doctoral fellowship </p>
-<p><code>2007</code>
-Martino Scholar, Harvard/MIT Health Science Tech. Inst.</p>
-<p><code>2005-2008</code>
-NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada</p>
-<p><code>2005</code>
-OGS Postgraduate Scholarship (declined), Ontario Government, Canada</p>
-<p><code>2004</code>
-NSERC Summer Research Award, National Science Engineering Research Council, Canada</p>
-<p><code>2003</code>
-#2 Canadian Army University Course Undergrad Scholarship,University of Toronto</p>
-<h2>Awards</h2>
-<p><code>2012</code>
-Bursary recipient, <em>Exploring Human Host-Microbiome Interactions in Health and Disease</em>, Wellcome Trust Scientific Conferences</p>
-<p><code>2008</code>
-Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst.</p>
-<p><code>2008</code>
-Competition Semifinalist, MIT 100k Business Plan</p>
-<p><code>2004</code>
-University of Toronto Life Sciences Award, University of Toronto</p>
-<p><code>2002-04</code>
-Silver T – academic athletic excellence, University of Toronto</p>
-<p><code>2003</code>
-OUA Academic Achievement Award, Ontario, Canada</p>
-<p><code>2001</code>
-Ontario Scholar, Government of Ontario, Canada</p>
-<h2>Publications</h2>
-<!-- A list is also available [online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ) -->
-
-<h3>Journals</h3>
-<p><code>2012</code>
-<em>Eliseo Papa</em>, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.<br />
-<a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039242">Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.</a>
-<strong>PLoS ONE</strong> 2012;7(6):e39242.</p>
-<p><code>2011</code>
-Rhiannon White, Sachiko Miyata, <em>Eliseo Papa</em>, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.<br />
-Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner.
-<strong>PLoS Negl Trop Dis.</strong> 2011 Oct;5(10):e1340.</p>
-<p><code>2011</code>
-Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, <em>Eliseo Papa</em>, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.<br />
-The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification.
-<strong>Infection and Immunity</strong> 2011 79(3):1098-106\</p>
-<p><code>2009</code>
-Adebola Ogunniyi, Craig Story, <em>Eliseo Papa</em>, Eduardo Guillen, J. Christopher Love.<br />
-Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies.
-<strong>Nature Protocols</strong> 2009 4(5):767-82</p>
-<p><code>2009</code>
-Jehnna L. Ronan, Craig Story, <em>Eliseo Papa</em>, J. Christopher Love.
-Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving.
-<strong>Journal of Immunological Methods</strong> 2009, 340(2):164-9\</p>
-<p><code>2008</code>
-Craig Story*, <em>Eliseo Papa* (co-author)</em>, Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.<br />
-Profiling Antibody Responses by Multiparametric Analysis of Single B Cells.
-<strong>PNAS</strong> 2008 105(46):17902-7</p>
-<p><code>2005</code>
-Hans Fischer, <em>Eli Papa</em>, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan.<br />
-Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components.
-<strong>SPIE Proceedings</strong> 2005 5969,54</p>
-<p><code>2004</code>
-Wen Jiang, <em>Eli Papa</em>, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan.
-Semiconductor quantum dots as contrast agents for whole animal imaging.
-<strong>Trends in Biotechnology</strong> 2004 22:12</p>
-<h3>Posters</h3>
-<p><code>2012</code>
-White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K<br />
-Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37<br />
-<em>Molecular and Cellular Biology of Helminth Parasites VII</em></p>
-<p><code>2012</code>
-Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.<br />
-<a href="http://eliseopapa.org/downloads/documents/ibdML-poster.pdf">Diagnosing IBD from the fecal microbiome</a><br />
-<em>Exploring Human Host-Microbiome Interactions in Health and Disease, Wellcome Trust Scientific Conferences</em></p>
-<p><code>2008</code>
-High-Throughput and High-Content Screening of Antibody Responses from Single Cells<br />
-<em>AIChE annual meeting, Nanoscale Science Engineering Forum</em></p>
-<p><code>2008</code>
-Applying Ligands to B Cell Receptors by Microfluidics<br />
-<em>AIChE annual meeting, Engineering Fundamentals in Life Sciences</em></p>
-<p><code>2008</code>
-Microengraving for high-throughput affinity mapping of humoral responses<br />
-<em>Harvard/MIT HST Forum</em></p>
-<p><code>2008</code>
-Multi-variate profiling of B cell immune responses<br />
-<em>Novartis Vaccine Symposium</em></p>
-<h3>Patents</h3>
-<p><code>2009</code>
-Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279 </p>
-<h2>Research</h2>
-<p><code>2009-now</code>
-<strong>Alm Laboratory for Microbiology, Prof. Eric J. Alm</strong>, MIT</p>
-<ul>
-<li>Human Microbiome Project </li>
-<li>Bioinformatic analysis of large datasets</li>
-<li>Microbial evolution, phylogenetics</li>
-</ul>
-<p><code>2006-2009</code>
-<strong>Laboratory of Hidde L. Ploegh</strong>, Whitehead Institute, MIT</p>
-<ul>
-<li>Affinity and isotype mapping of antibody secretion in individual primary B cells.</li>
-<li>Development of computational and statistical tools to monitor and predict evolution of immune responses</li>
-<li>Murine antibody cloning and expression; fluorescence tagging</li>
-<li>Real time fluorescence microcopy; advanced image analysis</li>
-</ul>
-<p><code>2004-2005</code>
-<strong>Biomedical Nanotechnology Group, Prof. W C. Chan</strong>, University of Toronto</p>
-<ul>
-<li>Nanoparticles cytotoxicity</li>
-<li>Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD)</li>
-<li>Real time fluorescence microscopy, single molecule spectroscopy and biophysics.</li>
-</ul>
-<p><code>2003</code>
-<strong>Biomaterials Group, Prof. M.C.Tanzi</strong>, Politecnico di Milano, Italy</p>
-<ul>
-<li>Synthesis of biocompatible polymeric scaffolds for tissue engineering applications.</li>
-<li>Morphological, mechanical and functional characterization of polyurethane scaffolds.</li>
-</ul>
-<h2>Other employment</h2>
-<p><code>2006</code>
-<strong>ESL Teacher, Inlingua Language School,</strong> Brescia, Italy</p>
-<ul>
-<li>Teaching approx. 12hrs/week on individual basis and to large groups</li>
-<li>Provided on site focussed training for companies</li>
-</ul>
-<p><code>2004-2005</code>
-<strong>Residence Don, St.Michael’s College Residence,</strong> University of Toronto, Canada</p>
-<ul>
-<li>Mediate conflicts and provide academic or personal consulting.</li>
-<li>Trained in cultural competence and conflict resolution</li>
-<li>Responsible to enforce rules and to foster an accepting community</li>
-</ul>
-<p><code>2000-2002</code>
-<strong>IT Consultant System Admin, Ital Engineering s.a.s.,</strong> Brescia, Italy</p>
-<ul>
-<li>Interviewed the customer and performed an organizational analysis</li>
-<li>Regularly performed formal presentations to the management</li>
-</ul>
-<p><code>2000</code>
-<strong>Graphic Designer, Photo Image Studio,</strong> Brescia, Italy</p>
-<ul>
-<li>Assisted photographers in the preparation of gallery exhibitions and openings</li>
-</ul>
-<h2>Extracurricular</h2>
-<p><code>2006-2008</code>
-<strong>Collegiate Cycling. <a href="http://cycling.mit.edu/www/home">MIT Cycling Team</a></strong></p>
-<ul>
-<li>National Collegiate Road Champions</li>
-<li>Eastern Collegiate Cycling Conference Road Champions</li>
-<li><em>Captain</em>, Cyclocross, 2nd US National Championship</li>
-<li>Eastern Collegiate Cycling Conference Road Champions</li>
-<li>Cyclocross, US National Champions</li>
-</ul>
-<p><code>2006</code>
-<strong>Competitive Triathlon. Team Atletica Desenzano</strong></p>
-<ul>
-<li>9th cat. at ITU Bardolino’s International Triathlon</li>
-</ul>
-<p><code>2003-2004</code>
-<strong>Competitive Sailing. Italian sailing federation (FIV).</strong></p>
-<ul>
-<li>12th at European IMS Sailing Championship</li>
-<li>6th at Canadian J105 Championship</li>
-</ul>
-<p><code>2004</code>
-<strong>Engineers Without Borders.</strong></p>
-<ul>
-<li>University of Toronto Conference delegate</li>
-</ul>
-<p><code>2002</code>
-<strong>University of Toronto Varsity Waterpolo.</strong></p>
-<ul>
-<li>OUA Conference Champions</li>
-</ul>
-<p><code>1998-2001</code>
-<strong>Nuoto Club Brescia Swimming Club</strong></p>
-<ul>
-<li>Regional level competitions</li>
-</ul>
-<h2>Volunteering</h2>
-<p><code>2005</code>
-<strong>Field Operative, AISPO, San Raffaele del Monte Tabor Foundation.</strong> Milan, Italy</p>
-<ul>
-<li>Streamlined diagnostic routines, Kampala’s Hospital &amp; Gulu’s outpost, Uganda</li>
-<li>Consulted regarding the infrastructure, human resources and logistics of the Kampala’s hospital</li>
-</ul>
-<h2>Interests</h2>
-<p>Jazz music. International relations. Semiotics and
-its implications on mass psychology. Buddhism, Zen and oriental
-philosophies. Reading classics of Italian and English literature.
-Travelled by kayak along the major European rivers. Rock Climbing.</p>
-<!-- ### Footer
-
-Last updated: October 2012 --> \ No newline at end of file
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# Eliseo Papa
Biomedical Engineer, Computational Biologist, Data Scientist