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authoreliseo papa <elipapa@alum.mit.edu> 2012-10-11 16:34:47 +0100
committereliseo papa <elipapa@alum.mit.edu> 2012-10-11 16:34:47 +0100
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+<!doctype html>
+<head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
+ <link href="epcv.css" type="text/css" rel="stylesheet">
+</head>
+<h1>Eliseo Papa</h1>
+<p><em>Biomedical Engineer, Computational Biologist, Data Scientist</em></p>
+<p><address markdown=1></p>
+<blockquote>
+<p><a href="mailto:elipapa@alum.mit.edu">elipapa@alum.mit.edu</a> |
+<a href="http://eliseopapa.org">eliseopapa.org</a> |
+<a href="http://uk.linkedin.com/in/eliseopapa">LinkedIn</a> |
+<!-- > skype: eliseo.papa -->
++44 7503 858936
+<!-- > +1 347 635 4736 -->
+</address></p>
+</blockquote>
+<!--
+>Born: September 16, 1982 — Belleville, Canada
+>Nationality: Italian & Canadian citizen
+-->
+
+<h3>Current position</h3>
+<p>MBBS Candidate, Graduate Entry Medicine, Imperial College London</p>
+<p>Researcher, <a href="http://almlab.mit.edu">Alm lab</a>, MIT</p>
+<h4>Areas of specialization</h4>
+<p>Medical Engineering, Analysis of large data sets, Microbiome, Machine learning, Immunology, Optics, Nano/microfabrication, Phylogenetics.</p>
+<h4>Research interests</h4>
+<p>Host-pathogen interactions at the level of microbiome and single cells. Human Microbiome Project. High-throughput diagnostics. Electronic health records. Emerging properties of networks in a biological and social context. Self-organized systems.</p>
+<h3>Languages</h3>
+<ul>
+<li>Italian: Mother tongue</li>
+<li>English: Perfect oral &amp; written fluency<br />
+</li>
+<li>French: Working knowledge<br />
+</li>
+</ul>
+<h3>Education</h3>
+<p>Imperial College London
+<code>2009-now</code>
+: MBBS Graduate Entry Medicine Programme</p>
+<p>Harvard Medical School &amp; Massachusets Institute of Technology
+<code>2006-2012</code>
+: PhD, Biomedical Engineering,<br />
+<a href="http://hst.mit.edu">Harvard/MIT Health Science &amp; Technology Institute</a><br />
+ Thesis: <a href="https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1">High-throughput experimental and computational tools for exploring immunity and the microbiome</a><br />
+ Representative courses:<br />
+<em>Harvard Medical School</em> - pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology.<br />
+<em>MIT</em> - biomechanics, statistical learning, systems microbiology, forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling.</p>
+<p>Massachusets Institute of Technology
+<code>2006-2008</code>
+: SM in Mechanical Engineering</p>
+<p>University of Toronto
+<code>2001-2005</code>
+: BASc (Honors)
+ Engineering Science (Biomedical Option)</p>
+<h3>Fellowships</h3>
+<p><code>2010-2011</code>
+NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada</p>
+<p><code>2008-2009</code>
+Poitras pre-doctoral fellowship </p>
+<p><code>2007</code>
+Martino Scholar, Harvard/MIT Health Science Tech. Inst.</p>
+<p><code>2005-2008</code>
+NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada</p>
+<p><code>2005</code>
+OGS Postgraduate Scholarship (declined), Ontario Government, Canada</p>
+<p><code>2004</code>
+NSERC Summer Research Award, National Science Engineering Research Council, Canada</p>
+<p><code>2003</code>
+#2 Canadian Army University Course Undergrad Scholarship,University of Toronto</p>
+<h3>Honors &amp; awards</h3>
+<p><code>2012</code>
+Bursary recipient, <em>Exploring Human Host-Microbiome Interactions in Health and Disease</em>, Wellcome Trust Scientific Conferences</p>
+<p><code>2008</code>
+Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst.</p>
+<p><code>2008</code>
+Competition Semifinalist, MIT 100k Business Plan</p>
+<p><code>2004</code>
+University of Toronto Life Sciences Award, University of Toronto</p>
+<p><code>2002-04</code>
+Silver T – academic athletic excellence, University of Toronto</p>
+<p><code>2003</code>
+OUA Academic Achievement Award, Ontario, Canada</p>
+<p><code>2001</code>
+Ontario Scholar, Government of Ontario, Canada</p>
+<h3>Publications</h3>
+<!-- A list is also available [online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ) -->
+
+<h4>Journal articles</h4>
+<p><em>Eliseo Papa</em>, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.<br />
+<a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039242">Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.</a>
+<strong>PLoS One</strong>. 2012;7(6):e39242.</p>
+<p>Rhiannon White, Sachiko Miyata, <em>Eliseo Papa</em>, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.<br />
+Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner.
+<strong>PLoS Negl Trop Dis.</strong> 2011 Oct;5(10):e1340.</p>
+<p>Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, <em>Eliseo Papa</em>, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.<br />
+The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification.
+<strong>Infection and Immunity</strong> 2011 79(3):1098-106\</p>
+<p>Adebola Ogunniyi, Craig Story, <em>Eliseo Papa</em>, Eduardo Guillen, J. Christopher Love.<br />
+Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies.
+<strong>Nature Protocols</strong> 2009 4(5):767-82</p>
+<p>Jehnna L. Ronan, Craig Story, <em>Eliseo Papa</em>, J. Christopher Love.
+Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving.
+<strong>Journal of Immunological Methods</strong> 2009, 340(2):164-9\</p>
+<p>Craig Story*, <em>Eliseo Papa* (co-author)</em>, Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.<br />
+Profiling Antibody Responses by Multiparametric Analysis of Single B Cells.
+<strong>PNAS</strong> 2008 105(46):17902-7</p>
+<p>Hans Fischer, <em>Eli Papa</em>, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan.<br />
+Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components.
+<strong>SPIE Proceedings</strong> 2005 5969,54</p>
+<p>Wen Jiang, <em>Eli Papa</em>, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan.
+Semiconductor quantum dots as contrast agents for whole animal imaging.
+<strong>Trends in Biotechnology</strong> 2004 22:12</p>
+<h4>Posters</h4>
+<p><code>2012</code>
+White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K<br />
+Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37<br />
+<em>Molecular and Cellular Biology of Helminth Parasites VII</em></p>
+<p><code>2012</code>
+Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.<br />
+<a href="http://eliseopapa.org/downloads/documents/ibdML-poster.pdf">Diagnosing IBD from the fecal microbiome</a><br />
+<em>Exploring Human Host-Microbiome Interactions in Health and Disease, Wellcome Trust Scientific Conferences</em></p>
+<p><code>2008</code>
+High-Throughput and High-Content Screening of Antibody Responses from Single Cells<br />
+<em>AIChE annual meeting, Nanoscale Science Engineering Forum</em></p>
+<p><code>2008</code>
+Applying Ligands to B Cell Receptors by Microfluidics<br />
+<em>AIChE annual meeting, Engineering Fundamentals in Life Sciences</em></p>
+<p><code>2008</code>
+Microengraving for high-throughput affinity mapping of humoral responses<br />
+<em>Harvard/MIT HST Forum</em></p>
+<p><code>2008</code>
+Multi-variate profiling of B cell immune responses<br />
+<em>Novartis Vaccine Symposium</em></p>
+<h4>Patents</h4>
+<p><code>2009</code>
+Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279 </p>
+<h3>Research experience</h3>
+<p>Researcher, Alm Laboratory for Microbiology, Prof. Eric J. Alm, MIT
+<code>2009-present</code>
+: - Human Microbiome Project
+ - Bioinformatic analysis of large datasets
+ - Microbial evolution, phylogenetics</p>
+<p>Researcher, Laboratory of Hidde L. Ploegh, Whitehead Institute, MIT
+<code>2006-2009</code>
+: - Affinity and isotype mapping of antibody secretion in individual primary B cells.
+ - Development of computational and statistical tools to monitor and predict evolution of immune responses
+ - Murine antibody cloning and expression; fluorescence tagging
+ - Real time fluorescence microcopy; advanced image analysis</p>
+<p>Researcher, Biomedical Nanotechnology Group, Prof. W C. Chan, University of Toronto
+<code>2004-2005</code>
+: - Nanoparticles cytotoxicity
+ - Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD)
+ - Real time fluorescence microscopy, single molecule spectroscopy and biophysics.</p>
+<p>Researcher, Biomaterials Group, Prof. M.C.Tanzi, Politecnico di Milano, Italy
+<code>2003</code>
+: - Synthesis of biocompatible polymeric scaffolds for tissue engineering applications.
+ - Morphological, mechanical and functional characterization of polyurethane scaffolds.</p>
+<h3>Other employment</h3>
+<p>ESL Teacher, Inlingua Language School, Brescia, Italy
+<code>2006</code>
+: - Teaching approx. 12hrs/week on individual basis and to large groups
+ - Provided on site focussed training for companies</p>
+<p>Residence Don, St.Michael’s College Residence, University of Toronto
+<code>2004-2005</code>
+: - Mediate conflicts and provide academic or personal consulting.
+ - Trained in cultural competence and conflict resolution
+ - Responsible to enforce rules and to foster an accepting community</p>
+<p>IT Consultant System Admin, Ital Engineering s.a.s., Brescia, Italy
+<code>2000-2002</code>
+: - Interviewed the customer and performed an organizational analysis
+ - Regularly performed formal presentations to the management</p>
+<p>Graphic Designer, Photo Image Studio, Brescia, Italy
+<code>2000</code>
+: - Assisted photographers in the preparation of gallery exhibitions and openings</p>
+<h3>Extracurricular</h3>
+<p>Collegiate Cycling. <a href="http://cycling.mit.edu/www/home">MIT Cycling Team</a>
+<code>2006-2008</code>
+: - National Collegiate Road Champions
+ - Eastern Collegiate Cycling Conference Road Champions
+ - <em>Captain</em>, Cyclocross, $2^{nd}$ US National Championship
+ - Eastern Collegiate Cycling Conference Road Champions
+ - Cyclocross, US National Champions</p>
+<p>Competitive Triathlon. Team Atletica Desenzano
+<code>2006</code>
+: - 9th cat. at ITU Bardolino’s International Triathlon</p>
+<p>Competitive Sailing. Italian sailing federation (FIV).
+<code>2003-2004</code>
+: - 12th at European IMS Sailing Championship
+ - 6th at Canadian J105 Championship</p>
+<p>Engineers Without Borders.
+<code>2004</code>
+: - University of Toronto Conference delegate</p>
+<p>University of Toronto Varsity Waterpolo.
+<code>2002</code>
+: - OUA Conference Champions</p>
+<p>Nuoto Club Brescia Swimming Club
+<code>1998-2001</code>
+: - Regional level competitions</p>
+<h3>Volunteering</h3>
+<p>Field Operative, AISPO, San Raffaele del Monte Tabor Foundation, Milan, Italy
+<code>2005</code>
+: - Streamlined diagnostic routines, Kampala’s Hospital &amp; Gulu’s outpost, Uganda
+ - Consulted regarding the infrastructure, human resources and logistics of the Kampala’s hospital</p>
+<h3>Interests</h3>
+<p>Listening avidly to Jazz music. International relations. Semiotics and
+its implications on mass psychology. Buddhism, Zen and oriental
+philosophies. Reading classics of Italian and English literature.
+Travelled by kayak along the major European rivers. Rock Climbing.</p>
+<!-- ### Footer
+
+Last updated: October 2012 --> \ No newline at end of file
diff --git a/cv_eliseo_papa.md b/cv_eliseo_papa.md
index cb2ae19..8b22f79 100644
--- a/cv_eliseo_papa.md
+++ b/cv_eliseo_papa.md
@@ -1,25 +1,27 @@
# Eliseo Papa
_Biomedical Engineer, Computational Biologist, Data Scientist_
->[Download PDF](resume.pdf)
-
+<address markdown=1>
> [elipapa@alum.mit.edu](mailto:elipapa@alum.mit.edu) |
-[eliseopapa.org](http://eliseopapa.org)
->[LinkedIn](http://uk.linkedin.com/in/eliseopapa) | [@elipapa](http://twitter.com/elipapa)
+[eliseopapa.org](http://eliseopapa.org) |
+> [LinkedIn](http://uk.linkedin.com/in/eliseopapa) |
+<!-- > skype: eliseo.papa -->
+> +44 7503 858936
+<!-- > +1 347 635 4736 -->
+</address>
-> +44 7503 858936
-> +1 347 635 4736
-> skype: eliseo.papa
<!--
>Born: September 16, 1982 — Belleville, Canada
>Nationality: Italian & Canadian citizen
-->
+
### Current position
-- MBBS Candidate, Graduate Entry Medicine, Imperial College London
-- Researcher, Alm lab, MIT
+MBBS Candidate, Graduate Entry Medicine, Imperial College London
+
+Researcher, [Alm lab](http://almlab.mit.edu), MIT
#### Areas of specialization
@@ -31,270 +33,260 @@ Host-pathogen interactions at the level of microbiome and single cells. Human Mi
### Languages
-Italian: Mother tongue
-English: Perfect oral & written fluency
-French: Working knowledge
+- Italian: Mother tongue
+- English: Perfect oral & written fluency
+- French: Working knowledge
+
### Education
Imperial College London
-: __2009-present__
-MBBS Graduate Entry Medicine Programme
-
+`2009-now`
+: MBBS Graduate Entry Medicine Programme
+
Harvard Medical School & Massachusets Institute of Technology
-: PhD, [Harvard/MIT Health Science & Technology institute](hst.mit.edu)
- __2006 - 2012__
- Biomedical Engineering
- Thesis: [High-throughput experimental and computational tools for exploring immunity and the microbiome](https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1)
-
- Courses:
-
- * Harvard Medical School: pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology
- * MIT: biomechanics,statistical learning, systems microbiology forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling.
+`2006-2012`
+: PhD, Biomedical Engineering,
+ [Harvard/MIT Health Science & Technology Institute](http://hst.mit.edu)
+ Thesis: [High-throughput experimental and computational tools for exploring immunity and the microbiome](https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1)
+ Representative courses:
+ _Harvard Medical School_ - pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology.
+ _MIT_ - biomechanics, statistical learning, systems microbiology, forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling.
- `2006-2008`
Massachusets Institute of Technology
-: SM in Mechanical Engineering
- `2006-2008`
+`2006-2008`
+: SM in Mechanical Engineering
University of Toronto
-: BASc (Honors)
- __2001-2005__
- Engineering Science (Biomedical Option)
+`2001-2005`
+: BASc (Honors)
+ Engineering Science (Biomedical Option)
### Fellowships
-`2010-2011`
+`2010-2011`
NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada
-__2008-2009__
+`2008-2009`
Poitras pre-doctoral fellowship
-__2007__ Martino Scholar, Harvard/MIT Health Science Tech. Inst.
-
-__2005-2008__ NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada
+`2007`
+Martino Scholar, Harvard/MIT Health Science Tech. Inst.
+
+`2005-2008`
+NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada
-__2005__ OGS Postgraduate Scholarship (declined), Ontario Government, Canada2005
+`2005`
+OGS Postgraduate Scholarship (declined), Ontario Government, Canada
-__2004__ NSERC Summer Research Award, National Science Engineering Research Council, Canada
+`2004`
+NSERC Summer Research Award, National Science Engineering Research Council, Canada
-__2003__ #2 Canadian Army University Course Undergrad Scholarship,University of Toronto
+`2003`
+\#2 Canadian Army University Course Undergrad Scholarship,University of Toronto
### Honors & awards
-__2012__ Bursary recipient, *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences
+`2012`
+Bursary recipient, *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences
-__2008__ Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst.
+`2008`
+Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst.
-__2008__ Competition Semifinalist, MIT 100k Business Plan
+`2008`
+Competition Semifinalist, MIT 100k Business Plan
-__2004__ University of Toronto Life Sciences Award, University of Toronto
+`2004`
+University of Toronto Life Sciences Award, University of Toronto
-__2002-2004__ Silver T – academic athletic excellence, University of Toronto
+`2002-04`
+Silver T – academic athletic excellence, University of Toronto
-__2003__ OUA Academic Achievement Award, Ontario, Canada
+`2003`
+OUA Academic Achievement Award, Ontario, Canada
-__2001__ Ontario Scholar, Government of Ontario, Canada
+`2001`
+Ontario Scholar, Government of Ontario, Canada
### Publications
->A list is also available [online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ)
+<!-- A list is also available [online](http://scholar.google.co.uk/citations?user=LTOTl0YAAAAJ) -->
#### Journal articles
-*Eliseo Papa*, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.
-Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.
+*Eliseo Papa*, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.
+[Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.](http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039242)
**PLoS One**. 2012;7(6):e39242.
-Rhiannon White, Sachiko Miyata, *Eliseo Papa*, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.
+Rhiannon White, Sachiko Miyata, *Eliseo Papa*, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas.
Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner.
**PLoS Negl Trop Dis.** 2011 Oct;5(10):e1340.
-Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, *Eliseo Papa*, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.
+Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, *Eliseo Papa*, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas.
The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification.
**Infection and Immunity** 2011 79(3):1098-106\
-Adebola Ogunniyi, Craig Story, *Eliseo Papa*, Eduardo Guillen, J.
-Christopher Love. Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies.
+Adebola Ogunniyi, Craig Story, *Eliseo Papa*, Eduardo Guillen, J. Christopher Love.
+Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies.
**Nature Protocols** 2009 4(5):767-82
Jehnna L. Ronan, Craig Story, *Eliseo Papa*, J. Christopher Love.
-Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving.
+Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving.
**Journal of Immunological Methods** 2009, 340(2):164-9\
-Craig Story\*, *Eliseo Papa\* (co-author)*, Chih-Chi Andrew Hu,
-Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.
+Craig Story\*, *Eliseo Papa\* (co-author)*, Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love.
Profiling Antibody Responses by Multiparametric Analysis of Single B Cells.
**PNAS** 2008 105(46):17902-7
-Hans Fischer, *Eli Papa*, Lichuan Liu, K. Sandy Pang, Warren C. W.
-Chan.
+Hans Fischer, *Eli Papa*, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan.
Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components.
**SPIE Proceedings** 2005 5969,54
-Wen Jiang, *Eli Papa*, Hans Fischer, Sawitri Mardyani, Warren C.W.
-Chan.
+Wen Jiang, *Eli Papa*, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan.
Semiconductor quantum dots as contrast agents for whole animal imaging.
**Trends in Biotechnology** 2004 22:12
#### Posters
+`2012`
White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K
Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37
-: Molecular and Cellular Biology of Helminth Parasites VII __2012__
+*Molecular and Cellular Biology of Helminth Parasites VII*
+`2012`
Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm.
[Diagnosing IBD from the fecal microbiome](http://eliseopapa.org/downloads/documents/ibdML-poster.pdf)
-: *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences __2012__
+*Exploring Human Host-Microbiome Interactions in Health and Disease, Wellcome Trust Scientific Conferences*
+`2008`
High-Throughput and High-Content Screening of Antibody Responses from Single Cells
-: AIChE annual meeting, Nanoscale Science Engineering Forum __2008__
+*AIChE annual meeting, Nanoscale Science Engineering Forum*
+`2008`
Applying Ligands to B Cell Receptors by Microfluidics
-: AIChE annual meeting, Engineering Fundamentals in Life Sciences __2008__
+*AIChE annual meeting, Engineering Fundamentals in Life Sciences*
+`2008`
Microengraving for high-throughput affinity mapping of humoral responses
-: Harvard/MIT HST Forum __2008__
+*Harvard/MIT HST Forum*
+`2008`
Multi-variate profiling of B cell immune responses
-: Novartis Vaccine Symposium __2008__
-
-#### Patent applications
-
-Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279 __2009__
-
+*Novartis Vaccine Symposium*
-### Research experience {#experience}
-Researcher
-: Alm Laboratory for Microbiology
- Prof. Eric J. Alm
- MIT
- __2009 - present__
- - Human Microbiome Project
- - Bioinformatic analysis of large datasets
- - Microbial evolution, phylogenetics
+#### Patents
-Researcher
-: Laboratory of Hidde L. Ploegh
- Whitehead Institute
- MIT
- __2006-2009__
- - Affinity and isotype mapping of antibody secretion in individual primary
-B cells.
- - Development of computational and statistical tools to monitor and
-predict evolution of immune responses
- - Murine antibody cloning and expression; fluorescence tagging
- - Real time fluorescence microcopy; advanced image analysis
+`2009`
+Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279
-Researcher, Biomedical Nanotechnology Group, Prof. W C. Chan, University
-of Toronto2004-2005
-Nanoparticles cytotoxicity
+### Research experience
-Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD)
+Researcher, Alm Laboratory for Microbiology, Prof. Eric J. Alm, MIT
+`2009-present`
+: - Human Microbiome Project
+ - Bioinformatic analysis of large datasets
+ - Microbial evolution, phylogenetics
-Real time fluorescence microscopy, single molecule spectroscopy and
-biophysics.\
+Researcher, Laboratory of Hidde L. Ploegh, Whitehead Institute, MIT
+`2006-2009`
+: - Affinity and isotype mapping of antibody secretion in individual primary B cells.
+ - Development of computational and statistical tools to monitor and predict evolution of immune responses
+ - Murine antibody cloning and expression; fluorescence tagging
+ - Real time fluorescence microcopy; advanced image analysis
-Researcher, Biomaterials Group, Prof. M.C.Tanzi, Politecnico di Milano,
-Italy2003
+Researcher, Biomedical Nanotechnology Group, Prof. W C. Chan, University of Toronto
+`2004-2005`
+: - Nanoparticles cytotoxicity
+ - Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD)
+ - Real time fluorescence microscopy, single molecule spectroscopy and biophysics.
-Synthesis of biocompatible polymeric scaffolds for tissue engineering
-applications.
+Researcher, Biomaterials Group, Prof. M.C.Tanzi, Politecnico di Milano, Italy
+`2003`
+: - Synthesis of biocompatible polymeric scaffolds for tissue engineering applications.
+ - Morphological, mechanical and functional characterization of polyurethane scaffolds.
-Morphological, mechanical and functional characterization of
-polyurethane scaffolds.\
-
-### Other employment experience
+### Other employment
ESL Teacher, Inlingua Language School, Brescia, Italy
-__2006__
-
-- Teaching approx. 12hrs/week on individual basis and to large groups
-- Provided on site focussed training for companies\
-
-
-Residence Don, St.Michael’s College Residence, University of
-Toronto
-__2004-2005__
-
-- Mediate conflicts and provide academic or personal consulting.
-- Trained in cultural competence and conflict resolution
-- Responsible to enforce rules and to foster an accepting community
-
+`2006`
+: - Teaching approx. 12hrs/week on individual basis and to large groups
+ - Provided on site focussed training for companies
-IT Consultant System Admin, Ital Engineering s.a.s., Brescia,
-Italy
-__2000-2002__
-- Interviewed the customer and performed an organizational analysis
-- Regularly performed formal presentations to the management
+Residence Don, St.Michael’s College Residence, University of Toronto
+`2004-2005`
+: - Mediate conflicts and provide academic or personal consulting.
+ - Trained in cultural competence and conflict resolution
+ - Responsible to enforce rules and to foster an accepting community
-Graphic Designer, Photo Image Studio, Brescia, Italy
-__2000__
+IT Consultant System Admin, Ital Engineering s.a.s., Brescia, Italy
+`2000-2002`
+: - Interviewed the customer and performed an organizational analysis
+ - Regularly performed formal presentations to the management
-- Assisted photographers in the preparation of gallery
-exhibitions and openings
+Graphic Designer, Photo Image Studio, Brescia, Italy
+`2000`
+: - Assisted photographers in the preparation of gallery exhibitions and openings
-### Extracurricular activities
-Collegiate Cycling. MIT Cycling Team
+### Extracurricular
-- National Collegiate Road Champions __2008__
-- Eastern Collegiate Cycling Conference Road Champions __2008__
-- *Captain*, Cyclocross, $2^{nd}$ US National Championship __2007__
-- Eastern Collegiate Cycling Conference Road Champions __2007__
-- Cyclocross, US National Champions __2006__
+Collegiate Cycling. [MIT Cycling Team](http://cycling.mit.edu/www/home)
+`2006-2008`
+: - National Collegiate Road Champions
+ - Eastern Collegiate Cycling Conference Road Champions
+ - *Captain*, Cyclocross, $2^{nd}$ US National Championship
+ - Eastern Collegiate Cycling Conference Road Champions
+ - Cyclocross, US National Champions
-Competitive Triathlon. Atletica Desenzano
-
-- 9th cat. at ITU Bardolino’s International Triathlon __2006__
+Competitive Triathlon. Team Atletica Desenzano
+`2006`
+: - 9th cat. at ITU Bardolino’s International Triathlon
Competitive Sailing. Italian sailing federation (FIV).
+`2003-2004`
+: - 12th at European IMS Sailing Championship
+ - 6th at Canadian J105 Championship
-- 12th at European IMS Sailing Championship __2003__
-- 6th at Canadian J105 Championship __2004__
-
-
-Engineers Without Borders.
-- University of Toronto Conference delegate __2004__
+Engineers Without Borders.
+`2004`
+: - University of Toronto Conference delegate
University of Toronto Varsity Waterpolo.
+`2002`
+: - OUA Conference Champions
-- OUA Conference Champions __2002__
-
-
-Competitive Swimming. Nuoto Club Brescia Swimming Club
-__1998-2001__
-
-### Volunteering Experiences {#volunteering}
+Nuoto Club Brescia Swimming Club
+`1998-2001`
+: - Regional level competitions
-Field Operative, AISPO, San Raffaele del Monte Tabor Foundation,
-Milan, Italy
-__2005__
+### Volunteering
-- ID Laboratory Operative, Kampala’s Hospital Gulu’s outpost, Uganda
-- Assessed the infrastructure and human resources of Kampala’s hospital
+Field Operative, AISPO, San Raffaele del Monte Tabor Foundation, Milan, Italy
+`2005`
+: - Streamlined diagnostic routines, Kampala’s Hospital & Gulu’s outpost, Uganda
+ - Consulted regarding the infrastructure, human resources and logistics of the Kampala’s hospital
-### Interests {#interests}
+### Interests
Listening avidly to Jazz music. International relations. Semiotics and
its implications on mass psychology. Buddhism, Zen and oriental
philosophies. Reading classics of Italian and English literature.
Travelled by kayak along the major European rivers. Rock Climbing.
-### Footer {#footer}
+<!-- ### Footer
-Last updated:
+Last updated: October 2012 -->
diff --git a/cv_eliseo_papa.pdf b/cv_eliseo_papa.pdf
new file mode 100644
index 0000000..1fb875c
--- /dev/null
+++ b/cv_eliseo_papa.pdf
Binary files differ
diff --git a/epcv.css b/epcv.css
index 561b091..5a2f982 100644
--- a/epcv.css
+++ b/epcv.css
@@ -1,23 +1,57 @@
body {
- color: #222;
+ -webkit-font-smoothing: antialiased;
font: normal normal 400 100%/1.5em;
- font-family: Gill,sans-serif;
- margin: 3em auto;
- width: 40em
+ font-family: Verdana,sans-serif;
+ margin: 1em;
}
+hr {
+ clear: both;
+ visibility: hidden;
+ border: 0px;
+ height: 1.5em;
+}
+
+p {
+ position: relative;
+ left: 24em;
+ width: 40em;
+}
+
+p code {
+ font-weight: bold;
+ color: #aaa;
+ position: absolute;
+ left: -8em;
+}
+
+
+ul {
+ position: relative;
+ left: 21.5em;
+ list-style-type: none;
+ list-style-position:
+}
+
+
+
h1,h2,h3,h4,h5,h6 {
font-weight: 400;
font-family: Cousine,Verdana,sans-serif;
}
h1 {
- font-size: 225%;
+ font-size: 300%;
line-height: 1.3334em;
margin: 0 0 .1666em
}
+h1+p {
+ position: relative;
+ left: 0em;
+}
+
h2 {
font-size: 175%;
line-height: 1.28571429em;
@@ -26,8 +60,15 @@ h2 {
h3 {
font-size: 137.5%;
+ font-weight: bold;
line-height: 1.3636em;
- margin: 0 0 .5em;
+ margin-top: 1em;
+ position: relative;
+ top: 2.25em;
+}
+
+h3[title^="Footer"] {
+ visibility: hidden;
}
h4,h5,h6 {
@@ -36,30 +77,84 @@ h4,h5,h6 {
margin: 0 0 .7778em
}
+h4 {
+ position: relative;
+ left: 1.5em;
+ top: 2.25em;
+}
-a:link {
- color: #666
+a
+{
+ -webkit-transition:color .2s ease-in-out;
+ color:#09f;
+ text-decoration:none
}
-a:visited {
- color: #666
+a:hover
+{
+ color:#39f
}
-blockquote,ol,p,ul {
+
+
+/*blockquote,ol,p,ul {
display: block;
margin: 0 0 1.5em
-}
+}*/
blockquote {
- border-left: solid .1em #E4E4E4;
+ /*border-left: solid .1em #E4E4E4;*/
color: #919191;
- padding: 0 1.5em 0 1.4em
+ font-size: 0.75em;
+ padding: 0;
}
code {
font: normal normal 87.5%/1.71428571em monospace,sans-serif
}
+dl {
+ position: relative;
+ left: 24em;
+ width: 40em;
+}
+
+dl p {
+ margin-top: 0em;
+}
+
+dt code {
+ font-weight: bold;
+ color: #aaa;
+ position: relative;
+ left: -8em;
+ top: -1.5em;
+ line-height: 0.5em;
+}
+
+dd {
+ margin-bottom: 1em;
+}
+
+dl ul {
+ position: relative;
+ left: -4em;
+ top: -1.5em;
+}
+
+dt {
+ margin-bottom: 0;
+}
+
+address {
+ position: absolute;
+ left: 12em;
+ top: -0.5em;
+}
+
+
+
+/*
img {
display: block;
margin: 1.5em auto
@@ -69,20 +164,20 @@ pre {
display: block;
font: normal normal 87.5%/1.71428571em monospace,sans-serif;
margin: 1.71428571em
-}
+}*/
-ol,ul {
+/*ol,ul,dl {
list-style-position: outside;
padding: 0
}
ol ol,ol ul,ul ol,ul ul {
margin: 0 0 .75em 2em
-}
+}*/
-table {
+/*table {
border-collapse: collapse;
margin: 1.5em 0;
width: 100%
@@ -94,4 +189,4 @@ td,th {
font-size: 87.5%;
line-height: 1.71428571em;
text-align: center
-} \ No newline at end of file
+}*/ \ No newline at end of file
diff --git a/md2pdf.py b/md2pdf.py
new file mode 100755
index 0000000..08f5698
--- /dev/null
+++ b/md2pdf.py
@@ -0,0 +1,49 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+"""
+md2pdf
+converts markdown file to PDF using a given CSS style sheet
+
+usage:
+Outputs a PDF file, using the given CSS style sheet
+> md2pdf input.md --css input.css
+"""
+
+import markdown
+import codecs
+from subprocess import call
+
+import argparse
+parser = argparse.ArgumentParser(description='converts markdown file to PDF using a given CSS style sheet')
+
+parser.add_argument('mdsource')
+parser.add_argument('--css', dest="css")
+
+args = parser.parse_args()
+filename = args.mdsource.split('.')[0]
+
+
+if args.css:
+ head = """<!doctype html>
+<head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
+ <link href="%s" type="text/css" rel="stylesheet">
+</head>
+""" % args.css
+else:
+ head = """<!doctype html>
+<head>
+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
+</head>
+"""
+
+# convert the markdown file to html
+mdsourcef = codecs.open(args.mdsource, mode="r", encoding="utf8")
+body = markdown.markdown(mdsourcef.read())
+html = ''.join([head, body])
+
+output_file = codecs.open("%s.html" % filename, "w", encoding="utf8")
+output_file.write(html)
+print ">>> first writing out %s.html" % filename
+print ">>> calling wkthmltopdf" % filename
+call(["wkhtmltopdf", "%s.html" % filename, "%s.pdf" % filename])